PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_FCDEFA244.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 118aa    MW: 13574.8 Da    PI: 10.1178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_FCDEFA244.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++eEd  l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  Traes_1DL_FCDEFA244.1 14 RGPWSPEEDAMLKAYIEERGTGnNWIALPHKIGLKRCGKSCRLRWLNYL 62
                           89**********************************************7 PP

2Myb_DNA-binding42.61.4e-1369111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +T+eEd  + ++    G++ W+ Ia+ ++ gRt++++k++w++
  Traes_1DL_FCDEFA244.1  69 GDFTPEEDSTICKLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                            789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.957962IPR017930Myb domain
SuperFamilySSF466893.59E-2712109IPR009057Homeodomain-like
SMARTSM007171.3E-101364IPR001005SANT/Myb domain
PfamPF002495.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-241569IPR009057Homeodomain-like
CDDcd001679.55E-81662No hitNo description
PROSITE profilePS5129421.52163117IPR017930Myb domain
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PfamPF002494.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2470117IPR009057Homeodomain-like
CDDcd001678.83E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTPEEDSTIC KLYISIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A7e-25141172103MYB3
3zqc_D7e-25141172103MYB3
3zqc_G7e-25141172103MYB3
3zqc_J7e-25141172103MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117881e-110AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573606.13e-83PREDICTED: transcription factor RAX3
SwissprotQ9M2Y92e-72RAX3_ARATH; Transcription factor RAX3
TrEMBLW4ZZB43e-85W4ZZB4_WHEAT; Uncharacterized protein
STRINGMLOC_56989.21e-84(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-73myb domain protein 84
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]